Files in wikipathways/rWikiPathways
rWikiPathways - R client library for the WikiPathways API
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/downloadPathwayArchive.R
R/findPathwaysByLiterature.R
R/findPathwaysByOrcid.R
R/findPathwaysByText.R
R/findPathwaysByXref.R
R/getCounts.R
R/getCurationStatus.R
R/getOntologyTerms.R
R/getPathway.R
R/getPathwayHistory.R
R/getPathwayInfo.R
R/getRecentChanges.R
R/getXrefList.R
R/listCommunities.R
R/listOrganisms.R
R/listPathways.R
R/readGMT.R
R/readPathwayGMT.R
R/utilities.R
R/writeGMT.R
README.md
docs/404.html
docs/CNAME
docs/LICENSE-text.html
docs/articles/Overview.html
docs/articles/Overview_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Pathway-Analysis.html
docs/articles/Pathway-Analysis_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/index.html
docs/articles/rWikiPathways-and-BridgeDbR.html
docs/articles/rWikiPathways-and-BridgeDbR_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/rWikiPathways-and-RCy3.html
docs/articles/rWikiPathways-and-RCy3_files/accessible-code-block-0.0.1/empty-anchor.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/downloadPathwayArchive.html
docs/reference/findPathwayIdsByLiterature.html
docs/reference/findPathwayIdsByText.html
docs/reference/findPathwayIdsByXref.html
docs/reference/findPathwayNamesByLiterature.html
docs/reference/findPathwayNamesByText.html
docs/reference/findPathwayNamesByXref.html
docs/reference/findPathwayUrlsByLiterature.html
docs/reference/findPathwayUrlsByText.html
docs/reference/findPathwayUrlsByXref.html
docs/reference/findPathwaysByLiterature.html
docs/reference/findPathwaysByText.html
docs/reference/findPathwaysByXref.html
docs/reference/getColoredPathway.html
docs/reference/getCurationTagNames.html
docs/reference/getCurationTags.html
docs/reference/getEveryCurationTag.html
docs/reference/getOntologyTermIds.html
docs/reference/getOntologyTermNames.html
docs/reference/getOntologyTerms.html
docs/reference/getPathway.html
docs/reference/getPathwayHistory.html
docs/reference/getPathwayIdsByCurationTag.html
docs/reference/getPathwayIdsByOntologyTerm.html
docs/reference/getPathwayIdsByParentOntologyTerm.html
docs/reference/getPathwayInfo.html
docs/reference/getPathwaysByCurationTag.html
docs/reference/getPathwaysByOntologyTerm.html
docs/reference/getPathwaysByParentOntologyTerm.html
docs/reference/getRecentChanges.html
docs/reference/getRecentChangesIds.html
docs/reference/getRecentChangesNames.html
docs/reference/getXrefList.html
docs/reference/index.html
docs/reference/listOrganisms.html
docs/reference/listPathwayIds.html
docs/reference/listPathwayNames.html
docs/reference/listPathwayUrls.html
docs/reference/listPathways.html
docs/reference/myGmtFile.gmt
docs/reference/readPathwayGMT.html
docs/reference/wikipathways-20171010-svg-Mus_musculus.zip
docs/reference/wikipathways-20200210-gpml-Mus_musculus.zip
docs/reference/wikipathways-20210110-gpml-Mus_musculus.zip
docs/reference/wikipathwaysAPI.html
docs/reference/wikipathwaysGET.html
docs/reference/writeGMT.html
inst/CITATION
inst/extdata/data-lung-cancer.csv
inst/extdata/drugbank-5.1.0.xgmml.zip
inst/extdata/my_gmt_file.gmt
inst/extdata/wikipathways-20201010-gmt-Homo_sapiens.gmt
man/downloadPathwayArchive.Rd
man/findPathwayIDsByOrcid.Rd
man/findPathwayIdsByLiterature.Rd
man/findPathwayIdsByText.Rd
man/findPathwayIdsByXref.Rd
man/findPathwayNamesByLiterature.Rd
man/findPathwayNamesByOrcid.Rd
man/findPathwayNamesByText.Rd
man/findPathwayNamesByXref.Rd
man/findPathwayUrlsByLiterature.Rd
man/findPathwayUrlsByOrcid.Rd
man/findPathwayUrlsByText.Rd
man/findPathwayUrlsByXref.Rd
man/findPathwaysByLiterature.Rd
man/findPathwaysByOrcid.Rd
man/findPathwaysByText.Rd
man/findPathwaysByXref.Rd
man/getCounts.Rd
man/getCurationStatus.Rd
man/getCurationTagNames.Rd
man/getCurationTags.Rd
man/getEveryCurationTag.Rd
man/getOntologyTermIds.Rd
man/getOntologyTermNames.Rd
man/getOntologyTerms.Rd
man/getPathway.Rd
man/getPathwayHistory.Rd
man/getPathwayIdsByCommunity.Rd
man/getPathwayIdsByCurationTag.Rd
man/getPathwayIdsByOntologyTerm.Rd
man/getPathwayIdsByParentOntologyTerm.Rd
man/getPathwayInfo.Rd
man/getPathwayNamesByCommunity.Rd
man/getPathwayUrlsByCommunity.Rd
man/getPathwaysByCommunity.Rd
man/getPathwaysByCurationTag.Rd
man/getPathwaysByOntologyTerm.Rd
man/getPathwaysByParentOntologyTerm.Rd
man/getRecentChanges.Rd
man/getRecentChangesIds.Rd
man/getRecentChangesNames.Rd
man/getXrefList.Rd
man/listCommunities.Rd
man/listOrganisms.Rd
man/listPathwayIds.Rd
man/listPathwayNames.Rd
man/listPathwayUrls.Rd
man/listPathways.Rd
man/readGMT.Rd
man/readGMTnames.Rd
man/readPathwayGMT.Rd
man/wikipathwaysAPI.Rd
man/wikipathwaysGET.Rd
man/writeGMT.Rd
rwikipathways.Rproj
tests/testthat.R
tests/testthat/test-findPathwaysByLiterature.R
tests/testthat/test-findPathwaysByText.R
tests/testthat/test-findPathwaysByXref.R
tests/testthat/test-getCurationTags.R
tests/testthat/test-getOntologyTerms.R
tests/testthat/test-getPathway.R
tests/testthat/test-getPathwayInfo.R
tests/testthat/test-getRecentChanges.R
tests/testthat/test-getXrefList.R
tests/testthat/test-listOrganisms.R
tests/testthat/test-listPathways.R
vignettes/Overview-schema.html
vignettes/Overview.Rmd
vignettes/Pathway-Analysis-schema.html
vignettes/Pathway-Analysis.Rmd
vignettes/Pathway-Analysis.html
vignettes/biomed-central.csl
vignettes/rWikiPathways-and-BridgeDbR-schema.html
vignettes/rWikiPathways-and-BridgeDbR.Rmd
vignettes/rWikiPathways-and-RCy3-schema.html
vignettes/rWikiPathways-and-RCy3.Rmd
vignettes/tutorial.bib
