readGMT: Read GMT File
In wikipathways/rWikiPathways: rWikiPathways - R client library for the WikiPathways API
readGMT R Documentation
Read GMT File
Description
Reads any generic GMT file to produce a data frame of
term-gene associations useful in enrichment analyses and other
applications.
Usage
readGMT(file)
Arguments
file
Path to GMT file
Details
The returned data frame includes only terms and genes. If you want
another data frame with terms and names, then see readGMTnames.
Value
Data frame of term-gene associations
See Also
readGMTnames
Examples
#readGMT(system.file("extdata","my_gmt_file.gmt", package="rWikiPathways"))
#readGMT("path_to_your_gmt_file.gmt")
wikipathways/rWikiPathways documentation built on Jan. 10, 2024, 11:37 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| readGMT | R Documentation |
Read GMT File
Description
Reads any generic GMT file to produce a data frame of term-gene associations useful in enrichment analyses and other applications.
Usage
readGMT(file)
Arguments
file |
Path to GMT file |
Details
The returned data frame includes only terms and genes. If you want another data frame with terms and names, then see readGMTnames.
Value
Data frame of term-gene associations
See Also
readGMTnames
Examples
#readGMT(system.file("extdata","my_gmt_file.gmt", package="rWikiPathways"))
#readGMT("path_to_your_gmt_file.gmt")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.