findPathwaysByXref: Find Pathways By Xref

In wikipathways/rWikiPathways: rWikiPathways - R client library for the WikiPathways API

Find Pathways By Xref

Description

Retrieve pathways containing the query Xref by identifier and system code.

Usage

findPathwaysByXref(identifier = NULL, systemCode = NULL)

Arguments

identifier	(character) The official ID specified by a data source or system
systemCode	(character) The BridgeDb code associated with the data source or system, e.g., En (Ensembl), L (NCBI gene), H (HGNC), U (UniProt), Wd (Wikidata), Ce (ChEBI), Ik (InChI). See column two of https://github.com/bridgedb/datasources/blob/main/datasources.tsv.

Value

A dataframe of pathway attributes including the matching identifiers

Examples

{
findPathwaysByXref('ENSG00000100031','En')
}

wikipathways/rWikiPathways documentation built on Jan. 10, 2024, 11:37 p.m.