downloadPathwayArchive: Download Pathway Archive

In wikipathways/rWikiPathways: rWikiPathways - R client library for the WikiPathways API

Download Pathway Archive

Description

Access the monthly archives of pathway content from WikiPathways.

Usage

downloadPathwayArchive(
  date = "current",
  organism = NULL,
  format = c("gpml", "gmt", "svg"),
  destpath = "./"
)

Arguments

date	(optional) The timestamp for a monthly release (e.g., 20171010) or "current" (default) for latest release.
organism	(optional) A particular species. See listOrganisms.
format	(optional) Either gpml (default), gmt or svg.
destpath	(optional) Destination path for file to be downloaded to. Default is current workding directory.

Details

If you do not specify an organism, then an archive file will not be downloaded. Rather, the archive will be opened in a tab in your default browser.

Value

Filename of downloaded file or an opened tab in default browser

See Also

readPathwayGMT

Examples

#downloadPathwayArchive()  ## open in browser
#downloadPathwayArchive(format="gmt")  ## open in browser
#downloadPathwayArchive(date="20230710", format="svg")  ## open in browser
#downloadPathwayArchive(date="20230710", organism="Mus musculus", format="svg")  ## download file
#downloadPathwayArchive(organism="Mus musculus")  ## download file

wikipathways/rWikiPathways documentation built on Jan. 10, 2024, 11:37 p.m.