Description Usage Arguments Details Value
View source: R/genoHeatmap_html.R
The genoHeatmap_html
function generates an interactive graphical output of the alleles per gene in multiple samples.
1 2 3 4 5 6 7 8 9 10 11 12 13 | genoHeatmap_html(
geno_table,
chain = c("IGH", "IGK", "IGL"),
gene_sort = "position",
removeIGH = TRUE,
lk_cutoff = 1,
mark_low_lk = TRUE,
n_line = 4,
line_length = 60,
pseudo_genes = FALSE,
ORF_genes = FALSE,
file = file.path(normalizePath(tempdir()), "genotype_heatmap.html")
)
|
geno_table |
genoytpe summary table. See details. |
chain |
the IG chain: IGH,IGK,IGL. Default is IGH. |
gene_sort |
if by 'name' the genes in the output are ordered lexicographically, if by 'position' only functional genes are used and are ordered by their chromosomal location. Default is 'position'. |
removeIGH |
if TRUE, 'IGH'\'IGK'\'IGL' prefix is removed from gene names. |
lk_cutoff |
the lK cutoff value to be considerd low for texture layer. Defualt is lK<1. |
mark_low_lk |
if TRUE, a texture is add for low lK values. Defualt is TRUE. |
A data.frame
created by inferGenotypeBaysian
.
An interactive heat-map visualization of the genotype inference for multiple samples.
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