sortGenotype: Sort multiple genotypes

In williamdlees/vdjbasevis: multiple visualizations for genotypes

Description

The sortGenotype function sort multiple genotype tables.

Usage

sortGenotype(
  geno_table,
  chain = c("IGH", "IGK", "IGL"),
  gene_sort = "position",
  removeIGH = TRUE,
  lk_cutoff = 1
)

Arguments

geno_table	genoytpe summary table. See details.
chain	the IG chain: IGH,IGK,IGL. Default is IGH.
gene_sort	if by 'name' the genes in the output are ordered lexicographically, if by 'position' only functional genes are used and are ordered by their chromosomal location. Default is 'position'.
removeIGH	if TRUE, 'IGH'\'IGK'\'IGL' prefix is removed from gene names.
lk_cutoff	the lK cutoff value to be considerd low for texture layer. Defualt is lK<1.

Details

A data.frame created by inferGenotypeBaysian.

Value

A data.frame of the genotypes.

williamdlees/vdjbasevis documentation built on Sept. 13, 2020, 12:17 a.m.