heterozygousBar_html: Graphical output of allele heterozygousity

In williamdlees/vdjbasevis: multiple visualizations for genotypes

Description

The heterozygousBar_html function generates an interactive graphical output of the alleles heterozygousity in a given population.

Usage

heterozygousBar_html(gene_segment, chain = c("IGH", "IGK", "IGL"))

Arguments

gene_segment	a data frame of allele heterozygousity count in a given population. See details.
chain	the IG chain: IGH,IGK,IGL. Default is IGH.

Details

A data.frame with the following columns.

• 'GENE': The gene call

• 'HM': Count of the Individuals homozygous to the gene

• 'HT': Count of the Individuals heterozygous to the gene

Value

An interactive stacked barplot visualization of the allele hetrouzygousity in a given population.

Examples

 gene_segment <- data.frame(GENE = c("V1-2",'V3-3','D2-8','D3-16','J4','J6'), HM = c(20,60,55,7,30,0) , HT = c(80,40,45,93,0,45))
 heterozygousBar_html(gene_segment)

williamdlees/vdjbasevis documentation built on Sept. 13, 2020, 12:17 a.m.