GetMultiPP: Posterior Probability of Each Transcript
In wiscstatman/EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data

GetMultiPP

R Documentation

Posterior Probability of Each Transcript

Description

'GetMultiPP' generates the Posterior Probability of being each pattern of each transcript based on the EBMultiTest output.

Usage

GetMultiPP(EBout)

Arguments

EBout

The output of EBMultiTest function.

Value

`PP`	The poster probabilities of being each pattern.
`MAP`	Gives the most likely pattern.
`Patterns`	The Patterns.

Author(s)

Ning Leng, XiuyuMa

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

Examples

data(MultiGeneMat)
MultiGeneMat.small = MultiGeneMat[201:210,]

Conditions = c("C1","C1","C2","C2","C3","C3")

MultiSize = MedianNorm(MultiGeneMat)

MultiOut = EBMultiTest(MultiGeneMat,Conditions=Conditions,uc = 2,
                     sizeFactors=MultiSize)
MultiPP = GetMultiPP(MultiOut)

wiscstatman/EBSeq documentation built on June 3, 2023, 7:34 a.m.