GetSelectedPatterns: Get selected patterns in a multiple condition study

In wiscstatman/EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data

Get selected patterns in a multiple condition study

Description

'GetSelectedPatterns' get selected patterns in a multiple condition study.

Usage

GetSelectedPatterns(EBout)

Arguments

EBout

Results from EBMultiTest

Value

A matrix describe selected patterns.

Author(s)

Ning Leng, Xiuyu Ma

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

Examples

data(MultiGeneMat)
Conditions=c("C1","C1","C2","C2","C3","C3")
MultiSize=MedianNorm(MultiGeneMat)
MultiOut=EBMultiTest(MultiGeneMat,Conditions=Conditions,
 sizeFactors=MultiSize)
PosParti=GetSelectedPatterns(MultiOut)

wiscstatman/EBSeq documentation built on June 3, 2023, 7:34 a.m.