Files in wrightaprilm/treesiftr
Visualizing The Relationship Between Phylogeny and Data
.Rbuildignore
.github/CONDUCT.md
.github/CONTRIBUTING.md
.github/issue_template.txt
.github/pull_request_template.txt
.travis.yml
.zenodo.json
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/.DS_Store
R/bears.R
R/check_subsets.R
R/data.R
R/deprecated/tree_dat.R
R/generate_sets.R
R/generate_tree_vec.R
R/generate_tree_vis.R
R/tree_dat.R
README.Rmd
README.md
README_files/figure-markdown_github/unnamed-chunk-4-1.png
README_files/figure-markdown_github/unnamed-chunk-4-2.png
README_files/figure-markdown_github/unnamed-chunk-4-3.png
README_files/figure-markdown_github/unnamed-chunk-4-4.png
README_files/figure-markdown_github/unnamed-chunk-4-5.png
codecov.yml
codemeta.json
data/.DS_Store
data/bears.RData
docs/CONDUCT.html
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/articles/00-Instuctor-Guide.html
docs/articles/00-Instuctor-Guide_files/figure-html/unnamed-chunk-10-1.png
docs/articles/00-Instuctor-Guide_files/figure-html/unnamed-chunk-10-2.png
docs/articles/00-Instuctor-Guide_files/figure-html/unnamed-chunk-10-3.png
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docs/articles/00-Instuctor-Guide_files/figure-html/unnamed-chunk-9-1.png
docs/articles/00-Instuctor-Guide_files/figure-html/unnamed-chunk-9-2.png
docs/articles/01-treesiftr.html
docs/articles/02-treesiftr-advanced.html
docs/articles/02-treesiftr-advanced_files/figure-html/unnamed-chunk-5-1.png
docs/articles/02-treesiftr-advanced_files/figure-html/unnamed-chunk-5-2.png
docs/articles/02-treesiftr-advanced_files/figure-html/unnamed-chunk-5-3.png
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docs/articles/02-treesiftr-advanced_files/figure-html/unnamed-chunk-5-5.png
docs/articles/ants.html
docs/articles/ants_files/figure-html/unnamed-chunk-1-1.png
docs/articles/ants_files/figure-html/unnamed-chunk-1-2.png
docs/articles/img/IGwebinterface.png
docs/articles/img/Q1.png
docs/articles/img/Q2.png
docs/articles/img/Q3.png
docs/articles/img/Q4.png
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/index_files/figure-html/pressure-1.png
docs/index_files/figure-html/pressure-2.png
docs/index_files/figure-html/pressure-3.png
docs/index_files/figure-html/unnamed-chunk-4-1.png
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docs/index_files/figure-html/unnamed-chunk-5-4.png
docs/index_files/figure-html/unnamed-chunk-5-5.png
docs/link.svg
docs/paper.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/bears.html
docs/reference/check_subs.html
docs/reference/generate_anc_states.html
docs/reference/generate_sliding.html
docs/reference/generate_tree_vec.html
docs/reference/generate_tree_vis.html
docs/reference/index.html
docs/reference/tree_dat.html
docs/shiny_deps.R
inst/extdata/bears_fasta.fa
inst/extdata/starting_tree.tre
inst/images/treesiftR.png
inst/slides.zip
inst/treesiftr_app/.DS_Store
inst/treesiftr_app/app.R
inst/treesiftr_app/data/bears_fasta.fa
inst/treesiftr_app/rsconnect/.Rprofile
inst/treesiftr_app/rsconnect/shinyapps.io/wrightaprilm/shiny-examples.dcf
inst/treesiftr_app/server.R
inst/treesiftr_app/ui.R
man/bears.Rd
man/check_subs.Rd
man/generate_sliding.Rd
man/generate_tree_vec.Rd
man/generate_tree_vis.Rd
man/tree_dat.Rd
paper.bib
paper.md
tests/testthat.R
tests/testthat/test_check_subs.R
tests/testthat/test_subs.R
tests/testthat/test_tree_vec.R
tests/testthat/test_vis_vec.R
tests/testthat/testdata/bears_fasta.fa
vignettes/00-Instructor-Guide.pdf
vignettes/00-Instuctor-Guide.Rmd
vignettes/00-Instuctor-Guide.pdf
vignettes/01-treesiftr.Rmd
vignettes/01-treesiftr.pdf
vignettes/02-treesiftr-advanced.Rmd
vignettes/02-treesiftr-advanced.pdf
vignettes/ants.Rmd
vignettes/img/.DS_Store
vignettes/img/IGwebinterface.png
vignettes/img/Q1.png
vignettes/img/Q2.png
vignettes/img/Q3.png
vignettes/img/Q4.png
