generate_tree_vec: Generate a list of parsimony trees, based on subsamples from...

In wrightaprilm/treesiftr: Visualizing The Relationship Between Phylogeny and Data

Description

Generate a list of phylogenetic trees based on subsamples from phylogenetic matrix, as generated from function generate_sets. Return return a vector of plots showing the tree and the specified data.

Usage

generate_tree_vec(phy_mat, start, stop, tree)

Arguments

phy_mat	Phylogenetic matrix
start	Which character to begin sampling characters at
stop	Which character to end sampling characters at
tree	Starting tree for parsimony search

Value

Vector

Examples

tr <- generate_tree_vec(bears, 1, 2, tree)

wrightaprilm/treesiftr documentation built on July 15, 2019, 11:19 a.m.