check_subs: Generate list of character sets to visualize, removing any...
In wrightaprilm/treesiftr: Visualizing The Relationship Between Phylogeny and Data
Description
Usage
Arguments
Value
Examples
View source: R/check_subsets.R
Description
Generate a dataframe of start and stop values. These will determine what character sets from the total phylogenetic matrix will appear in each visualization. Removes any sets with NULL characters, which cannot be used in phylogenetic estimation. Sources of NULLs may include typos, or two sequences being different lengths.
Usage
1
check_subs(sample_df, phy_mat)
Arguments
sample_df
Dataframe of start and stop vals for character set generation
phy_mat
Name of the phylogenetic matrix from which character sets will be sampled
Value
df
Examples
1
2
3
data(bears)
sample_df <- generate_sliding(phy_mat = bears, start_char = 45, stop_char = 62, steps = 4)
sample_df <- check_subs(sample_df, phy_mat)
wrightaprilm/treesiftr documentation built on July 15, 2019, 11:19 a.m.
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Description Usage Arguments Value Examples
View source: R/check_subsets.R
Description
Generate a dataframe of start and stop values. These will determine what character sets from the total phylogenetic matrix will appear in each visualization. Removes any sets with NULL characters, which cannot be used in phylogenetic estimation. Sources of NULLs may include typos, or two sequences being different lengths.
Usage
1 | check_subs(sample_df, phy_mat)
|
Arguments
sample_df |
Dataframe of start and stop vals for character set generation |
phy_mat |
Name of the phylogenetic matrix from which character sets will be sampled |
Value
df
Examples
1 2 3 | data(bears)
sample_df <- generate_sliding(phy_mat = bears, start_char = 45, stop_char = 62, steps = 4)
sample_df <- check_subs(sample_df, phy_mat)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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