Description Usage Arguments Value Examples
View source: R/deprecated/tree_dat.R View source: R/tree_dat.R
Generate extra data, including likelihood and parsimony scores for each tree. Export the values as tree annotation to put into the ggplot object.
1 |
tree |
Exported tree from parsimony search |
phy_mat |
Phylogenetic matrix |
start |
Which character to begin sampling characters at |
stop |
Which character to end sampling characters at |
pscore |
Boolean calculate and export parsimony scores for each character set |
lscore |
Boolean calculate and export likelihood scores for each character set |
tree Tree object with p and l scores annotated via $
1 2 |
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