API for xavierdidelot/BactDating
BactDating: Bayesian inference of ancestral dates on bacterial phylogenetic trees
| Global functions | |
|---|---|
| BactDating | Man page |
| allDates | Man page |
| as.mcmc.resBactDating | Man page Source code |
| as.treedata.resBactDating | Man page Source code |
| bactdate | Man page Source code |
| changeinorderedvec | Source code |
| clusteredTest | Man page Source code |
| coalprior | Source code |
| coalpriorC | Source code |
| coalpriorR | Man page Source code |
| collapse.singles.useRec | Man page |
| drop.tip.useRec | Man page |
| dualScale | Man page Source code |
| extractSample | Man page Source code |
| findDates | Source code |
| initRoot | Man page Source code |
| leafDates | Man page |
| likelihoodArc | Man page Source code |
| likelihoodArcC | Source code |
| likelihoodCarc | Man page Source code |
| likelihoodCarcC | Source code |
| likelihoodGamma | Man page Source code |
| likelihoodGammaC | Source code |
| likelihoodNegbin | Man page Source code |
| likelihoodNegbinC | Source code |
| likelihoodPoisson | Man page Source code |
| likelihoodPoissonC | Source code |
| likelihoodRelaxedgamma | Man page Source code |
| likelihoodRelaxedgammaC | Source code |
| loadCFML | Man page Source code |
| loadGubbins | Man page Source code |
| modelcompare | Man page Source code |
| nodeDates | Man page |
| plot.resBactDating | Man page Source code |
| plotDualScale | Man page Source code |
| print.resBactDating | Man page Source code |
| roottotip | Man page Source code |
| simcoaltree | Man page Source code |
| simdatedtree | Man page Source code |
| simobsphy | Man page Source code |
| staph | Man page |
| summary.resBactDating | Man page Source code |
