API for xavierdidelot/BactDating
BactDating: Bayesian inference of ancestral dates on bacterial phylogenetic trees

Global functions
BactDating Man page
allDates Man page
as.mcmc.resBactDating Man page Source code
as.treedata.resBactDating Man page Source code
bactdate Man page Source code
changeinorderedvec Source code
clusteredTest Man page Source code
coalprior Source code
coalpriorC Source code
coalpriorR Man page Source code
collapse.singles.useRec Man page
drop.tip.useRec Man page
dualScale Man page Source code
findDates Source code
initRoot Man page Source code
leafDates Man page
likelihoodArc Man page Source code
likelihoodArcC Source code
likelihoodCarc Man page Source code
likelihoodCarcC Source code
likelihoodGamma Man page Source code
likelihoodGammaC Source code
likelihoodNegbin Man page Source code
likelihoodNegbinC Source code
likelihoodPoisson Man page Source code
likelihoodPoissonC Source code
likelihoodRelaxedgamma Man page Source code
likelihoodRelaxedgammaC Source code
loadCFML Man page Source code
loadGubbins Man page Source code
modelcompare Man page Source code
nodeDates Man page
plot.resBactDating Man page Source code
plotDualScale Man page Source code
print.resBactDating Man page Source code
roottotip Man page Source code
simcoaltree Man page Source code
simdatedtree Man page Source code
simobsphy Man page Source code
staph Man page
summary.resBactDating Man page Source code
xavierdidelot/BactDating documentation built on April 1, 2020, 10:19 a.m.