collapse.singles.useRec: Modified collapse.singles() from package ape which deletes...

In xavierdidelot/BactDating: BactDating: Bayesian inference of ancestral dates on bacterial phylogenetic trees

Modified collapse.singles() from package ape which deletes the single nodes (i.e., with a single descendant) in a tree, respecting the rec function. Internal, used by drop.tip.rec

Description

Modified collapse.singles() from package ape which deletes the single nodes (i.e., with a single descendant) in a tree, respecting the rec function. Internal, used by drop.tip.rec

Usage

collapse.singles.useRec(tree, root.edge = FALSE)

Arguments

tree	an object of class "phylo".
root.edge	whether to get the singleton edges from the root until the first bifurcating node and put them as root.edge of the returned tree. By default, this is ignored or if the tree has no edge lengths.

Value

tree with rec data

xavierdidelot/BactDating documentation built on Oct. 21, 2024, 5:40 p.m.