simobsphy: Simulation of observed phylogeny given a dated tree

In xavierdidelot/BactDating: BactDating: Bayesian inference of ancestral dates on bacterial phylogenetic trees

Simulation of observed phylogeny given a dated tree

Description

Simulation of observed phylogeny given a dated tree

Usage

simobsphy(tree, mu = 10, sigma = 10, model = "strictgamma")

Arguments

tree	Dated tree
mu	Substitution clock rate
sigma	Per-branch std on the clock rate (used only by relaxed gamma model and negbin model)
model	Which model to use (poisson or negbin or strictgamma or relaxedgamma or arc or carc)

Value

An observed phylogenetic tree

xavierdidelot/BactDating documentation built on Oct. 21, 2024, 5:40 p.m.