initRoot: Initial tree rooting based on best root-to-tip correlation

In xavierdidelot/BactDating: BactDating: Bayesian inference of ancestral dates on bacterial phylogenetic trees

Initial tree rooting based on best root-to-tip correlation

Description

Initial tree rooting based on best root-to-tip correlation

Usage

initRoot(phy, date, mtry = 10, useRec = F)

Arguments

phy	An unrooted phylogenetic tree
date	Dates of sampling
mtry	Average number of rooting attempts per branch
useRec	Whether or not to use results from previous recombination analysis

Value

Rooted tree

xavierdidelot/BactDating documentation built on Nov. 23, 2023, 1:32 a.m.