Description Usage Arguments Value
Match groups by marker genes and decompose into new groups by purity cut.
1 | cluster_map_by_marker(marker_file_list, cutoff = 0.1, output)
|
marker_file_list |
A list of csv files. Each file is a marker gene table for a sample. The columns named as 'cluster' and 'gene' are required. |
cutoff |
The edge length cutoff to decide the sub-nodes to merge or not. DEFAULT is 0.1. |
output |
The output directory to save the matching results. |
A dataframe of the matching results. Heatmap of marker genes and the dendrogram will be saved into files.
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