cluster_map_by_marker: cluster_map_by_marker
In xgaoo/ClusterMap:
Description
Usage
Arguments
Value
Description
Match groups by marker genes and decompose into new groups by purity cut.
Usage
1
cluster_map_by_marker(marker_file_list, cutoff = 0.1, output)
Arguments
marker_file_list
A list of csv files. Each file is a marker gene table for a sample. The columns named as 'cluster' and 'gene' are required.
cutoff
The edge length cutoff to decide the sub-nodes to merge or not. DEFAULT is 0.1.
output
The output directory to save the matching results.
Value
A dataframe of the matching results. Heatmap of marker genes and the dendrogram will be saved into files.
xgaoo/ClusterMap documentation built on Oct. 9, 2021, 5:31 a.m.
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Description Usage Arguments Value
Description
Match groups by marker genes and decompose into new groups by purity cut.
Usage
1 | cluster_map_by_marker(marker_file_list, cutoff = 0.1, output)
|
Arguments
marker_file_list |
A list of csv files. Each file is a marker gene table for a sample. The columns named as 'cluster' and 'gene' are required. |
cutoff |
The edge length cutoff to decide the sub-nodes to merge or not. DEFAULT is 0.1. |
output |
The output directory to save the matching results. |
Value
A dataframe of the matching results. Heatmap of marker genes and the dendrogram will be saved into files.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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