separability_by_group: separability_by_group

In xgaoo/ClusterMap:

Description

Calculate separability for each group in a pair of samples. Internal function called by separability_pairwise.

Usage

separability_by_group(tsne_coord, group, sample_label, k = 5)

Arguments

tsne_coord	A dataframe of the two dimension t-SNE coordinates of each cell in the combined sample.
group	A vector of group assignment for each cell, with the same order as the tsne_coord.
sample_label	A vector of sample labels for each cell, with the same order as the tsne_coord.
k	K-nearest neighbours used to calculate distance. DEFAULT is 5.

Value

A vector of separability for each group.

xgaoo/ClusterMap documentation built on Oct. 9, 2021, 5:31 a.m.