separability_pairwise: separability_pairwise

In xgaoo/ClusterMap:

Description

Calculate separability for every sample pair. The higher the more separable.

Usage

separability_pairwise(tsne_coord, group, sample_label, k = 5)

Arguments

tsne_coord	A dataframe of the two dimension t-SNE coordinates of each cell in the combined sample.
group	A vector of group assignment for each cell, with the same order as the tsne_coord.
sample_label	A vector of sample labels for each cell, with the same order as the tsne_coord.
k	K-nearest neighbours used to calculate distance. DEFAULT is 5.

Value

A matrix of separability for each sample pair (column) and each group (row).

xgaoo/ClusterMap documentation built on Oct. 9, 2021, 5:31 a.m.