separability: separability
In xgaoo/ClusterMap:
Description
Usage
Arguments
Value
Description
Calculate separability for labeled data. Internal function called by separability_by_group.
Usage
1
separability(coord, class_label, k = 5)
Arguments
coord
A dataframe of the two dimension t-SNE coordinates of each cell in the combined sample.
class_label
A vector of sample labels for each cell, with the same order as the tsne_coord.
k
K-nearest neighbours used to calculate distance. DEFAULT is 5.
Value
A single value of separability.
xgaoo/ClusterMap documentation built on Oct. 9, 2021, 5:31 a.m.
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Description Usage Arguments Value
Description
Calculate separability for labeled data. Internal function called by separability_by_group.
Usage
1 | separability(coord, class_label, k = 5)
|
Arguments
coord |
A dataframe of the two dimension t-SNE coordinates of each cell in the combined sample. |
class_label |
A vector of sample labels for each cell, with the same order as the tsne_coord. |
k |
K-nearest neighbours used to calculate distance. DEFAULT is 5. |
Value
A single value of separability.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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