PerformPSEA: Function to perform peak set enrichment analysis

In xia-lab/MetaboAnalystR3.0: An R Package for Comprehensive Analysis of Metabolomics Data

Description

This is the main function that performs either the mummichog algorithm, GSEA, or both for peak set enrichment analysis.

Usage

PerformPSEA(mSetObj=NA, lib, libVersion, permNum = 100)

Arguments

mSetObj	Input the name of the created mSetObj object.
lib	Input the name of the organism library, default is hsa_mfn.
libVersion	Input the version of the KEGG pathway libraries ("current" or "old").
permNum	Numeric, input the number of permutations to perform. Default is 100.

Author(s)

Jasmine Chong, Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR3.0 documentation built on May 6, 2020, 11:03 p.m.