PlotMSPeaksPerm: Plot MS Peaks to Paths mummichog permutation p-values

In xia-lab/MetaboAnalystR3.0: An R Package for Comprehensive Analysis of Metabolomics Data

Description

Plots the mummichog permutation p-values

Usage

PlotMSPeaksPerm(
  mSetObj = NA,
  pathway,
  imgName,
  format = "png",
  dpi = 72,
  width = NA
)

Arguments

mSetObj	Input name of the created mSet Object
pathway	Input the name of the pathway
imgName	Input a name for the plot
format	Select the image format, "png", or "pdf".
dpi	Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.
width	Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.

Author(s)

Jeff [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR3.0 documentation built on May 6, 2020, 11:03 p.m.