PlotPathwayMZHits: Plot m/z hits in a pathway

In xia-lab/MetaboAnalystR3.0: An R Package for Comprehensive Analysis of Metabolomics Data

Description

Function to create a boxplot of m/z features within a specific pathway. m/z features used by the original mummichog algorithm are highlighted with an asterisk.

Usage

PlotPathwayMZHits(mSetObj = NA, msetNM, format = "png", dpi = 300, width = 10)

Arguments

mSetObj	Input the name of the created mSetObj object.
msetNM	Character, input the name of the pathway.
format	Character, input the format of the image to create.
dpi	Numeric, input the dpi of the image to create. Default is set to 300.
width	Numeric, input the width of the image to create. Default is set to 10.

Author(s)

Jasmine Chong, Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR3.0 documentation built on May 6, 2020, 11:03 p.m.