Description Usage Arguments Author(s)
View source: R/peaks_to_function.R
Plots either the original mummichog or GSEA results.
1 2 3 4 5 6 7 8 9 | PlotPeaks2Paths(
mSetObj = NA,
imgName,
format = "png",
dpi = 72,
width = 9,
labels = "default",
num_annot = 5
)
|
mSetObj |
Input the name of the created mSetObj object |
imgName |
Input a name for the plot |
format |
Character, input the format of the image to create. |
dpi |
Numeric, input the dpi of the image to create. |
width |
Numeric, input the width of the image to create. |
Labels |
Character, indicate if the plot should be labeled. By default it is set to "default", and the 5 top-ranked pathways per each algorithm will be plotted. Users can adjust the number of pathways to be annotated per pathway using the "num_annot" parameter. |
Jasmine Chong, Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
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