Man pages for xiayh17/RNAseqStat
A Pipeline to Process RNAseq Data
| barplot_base | barplot_base |
| barplot_base2 | barplot_base2 |
| counts_input | An example dataset |
| cut_much | cut data |
| DEG_container | a S4 class |
| deg_DESeq2 | Run DEseq2 |
| DEG_df | An example dataset |
| deg_edgeR | Run degeR |
| deg_limma | Run limma |
| deg_run | run DEG |
| enhance_barplot | Enhanced barplot |
| enhance_enricher_internal | enrich.internal |
| enhance_enrichGO | GO Enrichment Analysis of a gene set. Given a vector of... |
| enhance_gseplot | plot gseKEGG plot |
| enhance_heatmap | Heatmap for DEG data frame |
| enhance_volcano | enhance_volcano |
| enrichgesKEGG_run | run enrichgesKEGG |
| enrich_go | enrich_go |
| enrichGO_run | Enrichment analysis of go |
| enrich_gsekegg | gseKEGG from DEG data |
| enrich_kegg | enrich_go |
| enrichKEGG_run | Enrichment analysis of kegg |
| geskegg_barplot | gseKEGG bar plot |
| go_res | An example dataset |
| group_list | An example dataset |
| kegg_barplot | KEGG bar plot |
| pre_check | Pre-check you data by PCA and Heat maps |
| reexports | Objects exported from other packages |
| runAll | run all step in default setting |
| run_DESeq2 | Basic produce of DESeq2 |
| run_edgeR | Basic produce of edgeR |
| run_limma | Basic produce of limma |
| top_deg | Choose top genes from DEG data frame |
