pre_check: Pre-check you data by PCA and Heat maps

In xiayh17/RNAseqStat: A Pipeline to Process RNAseq Data

Pre-check you data by PCA and Heat maps

Description

A previous check function for overview the data sets.

Usage

pre_check(
  counts_data,
  group_list,
  dir = ".",
  prefix = "1-pre_check",
  palette = RColorBrewer::brewer.pal(3, "Set2")[1:2]
)

Arguments

counts_data	a counts data frame of rows in genes and columns in samples
group_list	a list ordered by samples in counts_data
dir	a directory to store results
prefix	a prefix of file names in this step
palette	a color palette for plots

Value

a directory contains figures for data QC check

Examples

pre_check(counts_input, group_list, tempdir())

xiayh17/RNAseqStat documentation built on June 16, 2022, 11:51 a.m.