enhance_barplot: Enhanced barplot

In xiayh17/RNAseqStat: A Pipeline to Process RNAseq Data

Enhanced barplot

Description

plot enrich result in bar plot

Usage

enhance_barplot(
  data,
  showCategory = 10,
  by = "Count",
  split = NULL,
  order = FALSE,
  drop = FALSE,
  fillstrip = TRUE,
  print = FALSE,
  split_color = RColorBrewer::brewer.pal(3, "Dark2"),
  bar_color = rev(RColorBrewer::brewer.pal(5, "GnBu")[3:5])
)

Arguments

data	'enrichResult' object, enrichGO result
showCategory	Category numbers to show
by	one of Count and GeneRatio
split	separate result by 'split' variable
order	logical
drop	logical
fillstrip	fill strip rect or not
print	logic for print plot
split_color	color for CC, MF, and BP
bar_color	color for bar

Value

ggplot or grid plot

Examples

## Not run: 
test <- enrich_go(deg_data = DEG_df, x = "log2FoldChange", y = "pvalue")
enhance_barplot(test$Down,showCategory=10,split = "ONTOLOGY")
enhance_barplot(test$Down,showCategory=30)

## End(Not run)

xiayh17/RNAseqStat documentation built on June 16, 2022, 11:51 a.m.