top_deg: Choose top genes from DEG data frame
In xiayh17/RNAseqStat: A Pipeline to Process RNAseq Data
top_deg R Documentation
Choose top genes from DEG data frame
Description
For example, if top = 50, head 50 and tail 50 will return from a
ordered DEG data frame after filtering by threshold value of P value
Usage
top_deg(deg_data, x, y, top, cut_P = 0.05)
Arguments
deg_data
a DEG data frame contains logFC and p value
x
which column is log FC
y
which column is P value
top
a single number or a length of 2 numeric vector, if 2 numeric vector, first one is top max logFC.
cut_P
a single number for threshold value of P value
Value
a character vector of top genes
Examples
top_deg(DEG_df, x = "log2FoldChange", y = "pvalue", 50, 0.05)
xiayh17/RNAseqStat documentation built on June 16, 2022, 11:51 a.m.
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| top_deg | R Documentation |
Choose top genes from DEG data frame
Description
For example, if top = 50, head 50 and tail 50 will return from a ordered DEG data frame after filtering by threshold value of P value
Usage
top_deg(deg_data, x, y, top, cut_P = 0.05)
Arguments
deg_data |
a DEG data frame contains logFC and p value |
x |
which column is log FC |
y |
which column is P value |
top |
a single number or a length of 2 numeric vector, if 2 numeric vector, first one is top max logFC. |
cut_P |
a single number for threshold value of P value |
Value
a character vector of top genes
Examples
top_deg(DEG_df, x = "log2FoldChange", y = "pvalue", 50, 0.05)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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