cut_much: cut data

In xiayh17/RNAseqStat: A Pipeline to Process RNAseq Data

cut data

Description

group data for plot DEG volcano by FDR and logFC

Usage

cut_much(
  deg_data,
  x,
  y,
  cut_FC = 1,
  cut_P = 0.05,
  label = c("Down", "Stable", "Up"),
  label_ns = "Stable"
)

Arguments

deg_data	a DEG data frame contains logFC and p value
x	which column is log FC
y	which column is P value
cut_FC	a single number character or numeric vector in threshold value of log FC
cut_P	threshold value of P value, can set for every cut_FC number in numeric vector format
label	symbol word for groups
label_ns	which group is the stable group

Value

add group column in data frame

Examples

cut_much(DEG_df, x = "log2FoldChange", y = "pvalue", cut_FC = 1,cut_P = 0.05,
label = c("Down","Stable","Up"), label_ns = "Stable")

xiayh17/RNAseqStat documentation built on June 16, 2022, 11:51 a.m.