Man pages for xizhihui/BTCR
Simple Stats and Plots for BCR and TCR
| annotateTCR | download the lastest vdjdb-db |
| assignStatus | assign status: clonal or not |
| barPointError | barplot with points and error bars based on mulitple samples... |
| calcOverlap | calculate the clonotype overlaps in each group |
| filterBtcr | filter data |
| hello | Hello, World! |
| loadSingle | load data |
| plotAnnoDim | plot the antigen species |
| plotCdr3 | barplot of top n cdr3 sequences usage in each group. |
| plotCellCR | barplot of cells with TCR or BCR percentages in grouped T... |
| plotCloneDim | dimension plots of clonotypes |
| plotCloneState | barplot of distributions of clone status in grouped T cells... |
| plotGeneBar | barplot of each VDJ gene usages |
| plotSharedCloneDim | dimension plots of shared or unique clonotypes in each... |
| plotVJpair | heatmap of v-j pairs usage |
| refreshId | create the final clonotype id |
| saveBtcr | save the BTCR data to a csv file |
| vdjdb | vdjdb slim dataset |
