plotCloneDim: dimension plots of clonotypes
In xizhihui/BTCR: Simple Stats and Plots for BCR and TCR
Description
Usage
Arguments
Value
View source: R/visualization.R
Description
dimension plots of clonotypes
Usage
1
2
plotCloneDim(btcr, scrna, colorby = c("CR", "cdr3s_aa", "cdr3s_nt"),
topn = 5, highlight = NULL, ...)
Arguments
btcr
A BTCR object.
scrna
The Single Cell RNAseq Seurat object corresponded to the BCR or TCR.
colorby
can be "CR", "cdr3s_aa", "cdr3s_nt". If "CR", only plot whether a cell has a TCR or BCR.
If "cdr3s", use topn or highlight to limit the clonotypes.
topn
Top N barcode frequency cdr3s to plot. Will be ignored if highlight is provided.
highlight
Which cdr3s in colorby to plot.
...
Arguments for Seurat::DimPlot.
Value
Seurat::DimPlot returns.
xizhihui/BTCR documentation built on Dec. 23, 2021, 7:10 p.m.
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Description Usage Arguments Value
View source: R/visualization.R
Description
dimension plots of clonotypes
Usage
1 2 | plotCloneDim(btcr, scrna, colorby = c("CR", "cdr3s_aa", "cdr3s_nt"),
topn = 5, highlight = NULL, ...)
|
Arguments
btcr |
A BTCR object. |
scrna |
The Single Cell RNAseq Seurat object corresponded to the BCR or TCR. |
colorby |
can be "CR", "cdr3s_aa", "cdr3s_nt". If "CR", only plot whether a cell has a TCR or BCR. If "cdr3s", use topn or highlight to limit the clonotypes. |
topn |
Top N barcode frequency cdr3s to plot. Will be ignored if highlight is provided. |
highlight |
Which cdr3s in colorby to plot. |
... |
Arguments for |
Value
Seurat::DimPlot returns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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