loadSingle: load data
In xizhihui/BTCR: Simple Stats and Plots for BCR and TCR

Description Usage Arguments Details Value

load Cellranger VDJ data, including BCR and TCR.

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loadSingle(path, sample, CR = c("BCR", "TCR"))

loadMultiple(paths, groups = NULL, CR = c("BCR", "TCR"))

`path`	Path to the Cellranger VDJ outs directory.
`sample`	Name for this sample.
`CR`	TCR or BCR.
`paths`	Named paths to Cellranger VDJ outs directory.
`groups`	Groups corresponded to each sample.

The "merge" element in BTCR list object is a combination of "clonotypes" and "contigs". In "merge", each gene isoforms are pasted togother so that every cell has just one line.

A BTCR list contains "clonotypes", "contigs" and "merge" data.

xizhihui/BTCR documentation built on Dec. 23, 2021, 7:10 p.m.