calcOverlap: calculate the clonotype overlaps in each group

In xizhihui/BTCR: Simple Stats and Plots for BCR and TCR

Description

calculate the clonotype overlaps in each group

Usage

calcOverlap(btcr, scrna, groupby, splitby = NULL,
  id = c("final_clonotype_id", "clonotype_id", "clonotype_newid"))

Arguments

btcr	A BTCR object.
scrna	scrna The Single Cell RNAseq Seurat object corresponded to the BCR or TCR.
groupby	Overlaps groups. The meta.data column used to group cells/barcodes, always be clusters.
splitby	Sample groups. Overlaps won't be calculated cross groups. The meta.data column used to group cells/barcodes, always be sample groups.
id	Which clonotype id used to calculate overlaps.

Value

A BTCR object with "overlaps" and "id" attributes.

xizhihui/BTCR documentation built on Dec. 23, 2021, 7:10 p.m.