Description Usage Arguments Value
View source: R/visualization.R
barplot of each VDJ gene usages
1 2 3 |
btcr |
A BTCR object. |
group |
Column in btcr$contigs to group each VDJ genes, always be sample or group. |
sample |
The sample column in btcr$contigs. |
gene |
Plot v_gene, j_gene or c_gene. |
dtype |
Plot barcode usage counts or percentages. |
isoform |
If set TRUE, plot the gene isoforms like TRAV-xxx. Or just plot the main gene like TRA, TRB (isoforms are summed.). |
combine |
Wrap plots togother. Or return the plot list. |
rotate |
Rotate the x labels. |
ncol |
When plot isoform, plot ncol in the layout. |
A ggplot or ggplot list or patchwork wrapped plot.
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