assignStatus: assign status: clonal or not

In xizhihui/BTCR: Simple Stats and Plots for BCR and TCR

Description

assign status: clonal or not

Usage

assignStatus(btcr, idcol = "clonotype_id", scrna = NULL,
  group.by = NULL)

Arguments

idcol	Column name used as the clonotype id.
scrna	The Single Cell RNAseq Seurat object corresponded to the BCR or TCR.
group.by	The meta.data column in scrna used to group the cells.

Details

"status" is used to indicate whether a cell is clonal or not, "status2" is used to indicate their groups relationship. For each clonotypes, if there are at least two cells with it, these cells would be clonals. For each clonals, if they are from different cell group, they are cross-cluster; otherwise, they are within-cluster.

Value

A new BTCR object with "status" and "status2"(if scrna and group.by provided).

xizhihui/BTCR documentation built on Dec. 23, 2021, 7:10 p.m.