mtx_name_match: Matching file names with sample names from metadata
In xmc811/xmcutil: Bioinformatics data processing utilities
Description
Usage
Arguments
Value
Description
Matching file names with sample names from metadata
Usage
1
mtx_name_match(mtx, metadata, sample_col, file_col, cutoff)
Arguments
mtx
A matrix - the raw gene count matrix
metadata
A dataframe - the metadata
sample_col
A string - the metadata column with sample names
file_col
A string - the metadata column with file names
cutoff
An integer - the cutoff for filtering low-expressed genes. Genes with total counts less than this cutoff will be excluded.
Value
A matrix
xmc811/xmcutil documentation built on June 4, 2021, 10:48 a.m.
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Description Usage Arguments Value
Description
Matching file names with sample names from metadata
Usage
1 | mtx_name_match(mtx, metadata, sample_col, file_col, cutoff)
|
Arguments
mtx |
A matrix - the raw gene count matrix |
metadata |
A dataframe - the metadata |
sample_col |
A string - the metadata column with sample names |
file_col |
A string - the metadata column with file names |
cutoff |
An integer - the cutoff for filtering low-expressed genes. Genes with total counts less than this cutoff will be excluded. |
Value
A matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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