plot_pca_vsd: PCA plot from vsd object
In xmc811/xmcutil: Bioinformatics data processing utilities
Description
Usage
Arguments
Value
Description
PCA plot from vsd object
Usage
1
plot_pca_vsd(vsd, var, pal = NULL, dir = 1)
Arguments
vsd
A vsd object
var
A string - the name of the variable matching metadata columns
pal
A string - palette name of RColorBrewer. Default value is NULL, taking the palettes set up in options('xmc.tripalette').
dir
An integer - 1 or -1, to adjust the direction of colors. Default value is 1.
Value
A ggplot2 plot
xmc811/xmcutil documentation built on June 4, 2021, 10:48 a.m.
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Description Usage Arguments Value
Description
PCA plot from vsd object
Usage
1 | plot_pca_vsd(vsd, var, pal = NULL, dir = 1)
|
Arguments
vsd |
A vsd object |
var |
A string - the name of the variable matching metadata columns |
pal |
A string - palette name of |
dir |
An integer - |
Value
A ggplot2 plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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