Man pages for xnnba1984/DoubletCollection
Find doublets in scRNA-seq data
| Clustering | Conduct Louvin Clustering on single dataset |
| Clustering.All | Conduct cell clustering on mutiple datasets |
| Clustering.All.Rate | Conduct cell clustering on mutiple datasets and removal rates |
| Clustering.Quality | Calculate singlet rates |
| FindACC | Calculate precision, recall, or true negative rate (TNR) of... |
| FindACC.All | Calculate precision, recall, or true negative rate (TNR) of... |
| FindAUC | Calculate AUPRC or AUROC for one dataset |
| FindAUC.All | Calculate AUPRC or AUROC for mutiple datasets |
| FindAUC.Single | Calculate AUPRC or AUROC |
| FindDE | Find DE genes |
| FindDEACC | Calculate precision, recall, and TNR of identified DE genes |
| FindDistributedAUC | Calculate concatenated AUPRC or AUROC |
| FindDistributedAUC.All | Calculate detection accuracy under distributed computing |
| FindDoublets | Call doublets on one dataset |
| FindDoublets.All | Call doublets on multiple datasets |
| FindDoublets.All.Rate | Call doublets on multiple datasets and doublet rates |
| FindParameters | Hyperparameter searching |
| FindScores | Calculate doublet scores on single dataset |
| FindScores.All | Calculate doublet scores on multiple dataset |
| FindTempDE | Infer temporally DE genes and calculate corresponding... |
| FindTempDE.All | Infer temporally DE genes and calculate corresponding DE... |
| FindTrajectory | Conduct cell trajectory inference |
| ListToDataframe | Transform a list to a dataframe |
| Plot_Barplot | Barplot |
| Plot_Barplot_temp | The temporally DE genes version of Barplot |
| Plot_Boxplot | Boxplot |
| Plot_Heatmap | Heatmap |
| Plot_Lineplot | Lineplot |
| Plot_Lineplot_Distributed | Lineplots for distributed computing |
| ReadData | Read rds datasets |
| RemoveDoublets | Remove doublets for single method on single dataset |
| RemoveDoublets.all | Remove doublets for multiple methods on multiple datasets |
| RemoveDoublets.All.Rate | Remove doublets for multiple methods on multiple datasets and... |
| RemoveDoublets.Method | Remove doublets for multiple methods on single dataset |
| SplitData | Split data into different batches |
