FindACC.All: Calculate precision, recall, or true negative rate (TNR) of...

In xnnba1984/DoubletCollection: Find doublets in scRNA-seq data

Calculate precision, recall, or true negative rate (TNR) of identified doublets on multiple datasets.

Description

Calculate precision, recall, or TNR based on identified doublet indices and true doublet annotations on multiple datasets.

Usage

FindACC.All(doublet.list.all, label.list, type)

Arguments

doublet.list.all	A list of doublet indices for different doublet-detection methods on multiple datasets.
label.list	A list of vectors of 0/1 doublet annotations on multiple datasets.

Value

A list of precision, recall, or TNR for different doublet-detection methods on multiple datasets.

Examples

precision.list.all <- FindACC.All(doublet.list.all = doublet.list.all, label.list = label.list, type = 'precision')
recall.list.all <- FindACC.All(doublet.list.all = doublet.list.all, label.list = label.list, type = 'recall')
tnr.list.all <- FindACC.All(doublet.list.all = doublet.list.all, label.list = label.list, type = 'TNR')

xnnba1984/DoubletCollection documentation built on Dec. 10, 2022, 11:13 a.m.