FindTrajectory: Conduct cell trajectory inference
In xnnba1984/DoubletCollection: Find doublets in scRNA-seq data
FindTrajectory R Documentation
Conduct cell trajectory inference
Description
Conduct cell trajectory inference by Slingshot on one dataset and draw the trajectory.
Usage
FindTrajectory(count, label, title)
Arguments
count
A scRNA-seq data matrix.
label
A vector of doublet annotations (0/1).
title
A title of the visualization.
Value
No return values.
Examples
data.trajectory <- readRDS('.../sim_psudotime_bifurcating.rds')
count <- data.trajectory$count
label <- data.trajectory$label
FindTrajectory(count=count, label=label, title='Contaminated Data')
xnnba1984/DoubletCollection documentation built on Dec. 10, 2022, 11:13 a.m.
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| FindTrajectory | R Documentation |
Conduct cell trajectory inference
Description
Conduct cell trajectory inference by Slingshot on one dataset and draw the trajectory.
Usage
FindTrajectory(count, label, title)
Arguments
count |
A scRNA-seq data matrix. |
label |
A vector of doublet annotations (0/1). |
title |
A title of the visualization. |
Value
No return values.
Examples
data.trajectory <- readRDS('.../sim_psudotime_bifurcating.rds')
count <- data.trajectory$count
label <- data.trajectory$label
FindTrajectory(count=count, label=label, title='Contaminated Data')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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