FindTempDE.All: Infer temporally DE genes and calculate corresponding DE...

In xnnba1984/DoubletCollection: Find doublets in scRNA-seq data

Infer temporally DE genes and calculate corresponding DE genes for multiple methods

Description

Infer temporally DE genes by Slingshot and GAM model on multiple datasets. Calculate corresponding precision, recall, and TNR of identified doublets.

Usage

FindTempDE.All(data.list, gene.de)

Arguments

data.list	A list of scRNA-seq count matrix.
gene.de	A vector of ground-truth temporally DE genes.

Value

A list of precision, recall, and TNR of identified temporally DE genes on multiple datasets.

Examples

doublet.list <- FindDoublets(score.list = score.list, rate = 0.2)
data.removal.list <- RemoveDoublets.Method(count = count, label = label, doublet.list = doublet.list)
data.removal.list[['Clean Data']] <- list(count=count.clean, label=label.clean)
de.temp.result.all <- FindTempDE.All(data.list=data.removal.list, gene.de=gene.de)

xnnba1984/DoubletCollection documentation built on Dec. 10, 2022, 11:13 a.m.