DBconstruct: DBconstruct function search for PANTHER ftp database and...
In xpingli/GOGOgadget: construct database for your organism and pick matching from your analysis sets.
Description
Usage
Author(s)
Examples
Description
DBconstruct takes 4 arguments: ftp, species, short, write and ...: "ftp" is the ftp file name in PANTHER. "species" is full latin name of your organisim. "short" is the short name for your organism. If write = TRUE, the function will write a csv file of the full ontology into your current directory, ... what you want this csv file to name.
Usage
1
DBconstruct(ftp, species, short, write = F, ...)
Author(s)
Xiaoping Li
Examples
1
2
3
## Not run:
DBconstruct("PTHR11.0_deinococcus", "Deinococcus radiodurans", "dra", T, "GOdatabase for dra.csv" )
## End(Not run)
xpingli/GOGOgadget documentation built on May 4, 2019, 1:25 p.m.
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Description Usage Author(s) Examples
Description
DBconstruct takes 4 arguments: ftp, species, short, write and ...: "ftp" is the ftp file name in PANTHER. "species" is full latin name of your organisim. "short" is the short name for your organism. If write = TRUE, the function will write a csv file of the full ontology into your current directory, ... what you want this csv file to name.
Usage
1 | DBconstruct(ftp, species, short, write = F, ...)
|
Author(s)
Xiaoping Li
Examples
1 2 3 | ## Not run:
DBconstruct("PTHR11.0_deinococcus", "Deinococcus radiodurans", "dra", T, "GOdatabase for dra.csv" )
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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