GOGOscavenger: GOGOscavenger function looks for the genes that have not been...
In xpingli/GOGOgadget: construct database for your organism and pick matching from your analysis sets.
Description
Usage
Author(s)
Examples
Description
GOGOscavenger takes 5 arguments. whole data is from GOGOpick processing where it generates a dataset containing all the significantly determined up and down genes. Screening it against the "pick", it finds out the genes that are not missed by the GOGOpick because there is not hit in PANTHER ftp. It looks for the GO terms for those genes in Uniprot instead. TaxiID is the taxonomy ID for the species, it can be found by UniProt.ws package function availableUniprotSpecies(). The function produced a whole data set of all the up and down genes ontology and the ones GOGO pick missed.
Usage
1
GOGOscavenger(whole, pick, taxiID, write = F, ...)
Author(s)
Xiaoping Li
Examples
1
## Not run: GOGOscavenger(whole, pick, 243230, write = T, "dra24hr_ontology.csv" )
xpingli/GOGOgadget documentation built on May 4, 2019, 1:25 p.m.
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Description Usage Author(s) Examples
Description
GOGOscavenger takes 5 arguments. whole data is from GOGOpick processing where it generates a dataset containing all the significantly determined up and down genes. Screening it against the "pick", it finds out the genes that are not missed by the GOGOpick because there is not hit in PANTHER ftp. It looks for the GO terms for those genes in Uniprot instead. TaxiID is the taxonomy ID for the species, it can be found by UniProt.ws package function availableUniprotSpecies(). The function produced a whole data set of all the up and down genes ontology and the ones GOGO pick missed.
Usage
1 | GOGOscavenger(whole, pick, taxiID, write = F, ...)
|
Author(s)
Xiaoping Li
Examples
1 | ## Not run: GOGOscavenger(whole, pick, 243230, write = T, "dra24hr_ontology.csv" )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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