GOGOpick: GOGOpick automatically adds goTerms and other elements to the...

In xpingli/GOGOgadget: construct database for your organism and pick matching from your analysis sets.

Description

GOGOpick takes 6 arguments: "dataset" contains differentially expressed genes from edgeR and DESeq2. "database" is the Ontology database file you created use "DBconstruct" function. write" defualt is TRUE would write results in a csv file in the current directory. Use ... to specify the name of the csv file. Species is the full name of your organism, short is the short name for it. It also returns up regulation, down regulation, and a whole csv files.

Usage

GOGOpick(dataset, database, species, short, write = TRUE, ...)

Author(s)

Xiaoping Li

Examples

## Not run: GOGOpick("DE_drad_24hr_adjst.csv", [dra]OntologyDataBase, "Deinococcus radiodurans", "dra",write = T, "Up and Down regulated genes by using DESeq2.csv")

xpingli/GOGOgadget documentation built on May 4, 2019, 1:25 p.m.