Provides convenient access to the data, ontologies, and semantics-based analytics offered by the Phenoscape Knowledgebase (KB) API. The KB integrates morphological trait data curated from phylogenetic systematics studies with morphological phenotypes of model organism gene knock-outs, all linked to the same shared ontologies in the Entity-Quality (EQ) formalism. The available capabilities include finding ontology terms; finding studies by taxon and anatomical concepts, and obtaining their trait matrices; finding ontological phenotype expressions; generating synthetic presence-absence trait matrices; obtaining anatomical presence-absence dependency matrices; and computing semantic similarity metrics between traits.
Package details |
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Maintainer | |
License | MIT + file LICENSE |
Version | 0.3.0 |
URL | https://github.com/phenoscape/rphenoscape http://rphenoscape.phenoscape.org |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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