get_term_label: Obtains the labels for a list of terms

In xu-hong/rphenoscape: Semantically Rich Phenotypic Traits from the Phenoscape Knowledgebase

Obtains the labels for a list of terms

Description

Attempts to obtain the label for each term, identified by IRI, in the input list. Terms for which no label is found in the database will have NA as the label in the result (see Value).

Usage

get_term_label(
  term_iris,
  preserveOrder = FALSE,
  verbose = FALSE,
  .tryClassification = TRUE
)

Arguments

term_iris	character, a list of term IRIs
preserveOrder	logical, whether the resulting data frame (see Value) is to be in the same row order as termIRIs. The default is not to preserve order.
verbose	logical, whether to print information about possibly time-consuming operations.
.tryClassification	logical, whether to try checking term classification when finding a label. If TRUE (the default), terms for which the default API endpoint does not yield a label will incur a second API call.

Value

A data.frame with columns "id" and "label". The "id" column contains the IRIs. The label will be NA for term IRIs that are not present in the KB, or for which the KB cannot produce a label.

xu-hong/rphenoscape documentation built on Jan. 28, 2024, 12:22 p.m.