API for xu-hong/rphenoscape
Semantically Rich Phenotypic Traits from the Phenoscape Knowledgebase
| Global functions | |
|---|---|
| .onAttach | Source code |
| Owl | Source code |
| Phenotype | Source code |
| add_provenance_record | Man page Source code |
| anatomy_ontology_iris | Man page |
| anatomy_term_info | Man page Source code |
| apply_term_iris | Source code |
| as.owl | Man page Source code |
| as.phenotype | Man page Source code |
| as.phenotype.data.frame | Man page Source code |
| as.phenotype.default | Source code |
| as.terminfo | Man page Source code |
| as.terminfo.data.frame | Source code |
| as.terminfo.default | Source code |
| as.terminfo.terminfo | Source code |
| bestPairs | Man page Source code |
| chars | Man page Source code |
| charstates | Man page Source code |
| charstates.data.frame | Source code |
| charstates.default | Source code |
| charstates.list | Source code |
| charstates.phenotype | Source code |
| clean_jsonld_names | Source code |
| corpus_size | Man page |
| cosine_similarity | Man page Source code |
| developsFrom_iri | Man page |
| entity_roots | Source code |
| find_quality_opposites | Source code |
| find_term | Man page Source code |
| gene_info | Man page Source code |
| get_KBinfo | Man page Source code |
| get_char_matrix | Man page Source code |
| get_char_matrix_meta | Man page Source code |
| get_csv_data | Man page Source code |
| get_data | Man page |
| get_json_data | Man page Source code |
| get_nexml_data | Man page Source code |
| get_ontotrace_data | Man page Source code |
| get_phenotypes | Man page Source code |
| get_plain_text | Man page Source code |
| get_studies | Man page Source code |
| get_study_data | Man page Source code |
| get_term_iri | Man page |
| get_term_label | Man page Source code |
| hasPart_iri | Man page |
| is.manchester_owl | Man page Source code |
| is.owl | Man page Source code |
| is.phenotype | Man page Source code |
| is.terminfo | Man page Source code |
| is_ancestor | Man page Source code |
| is_descendant | Man page Source code |
| is_extinct | Man page Source code |
| is_known_term_response | Source code |
| is_relation | Source code |
| is_unused_char | Man page Source code |
| is_unused_otu | Man page Source code |
| is_valid_phenotype | Man page Source code |
| is_valid_terminfo | Man page Source code |
| jaccard_similarity | Man page Source code |
| label_for_synonym_type | Source code |
| mssg | Source code |
| mutual_exclusivity_pairwise | Man page Source code |
| mutually_exclusive | Man page Source code |
| nexml_drop | Man page |
| nexml_drop_char | Man page Source code |
| nexml_drop_otu | Man page Source code |
| nexml_filter_items | Source code |
| obo_ont_type | Source code |
| obo_prefix | Man page Source code |
| owl | Man page |
| pa_dep_matrix | Man page Source code |
| partOf_iri | Man page |
| phenotype | Man page |
| phenotype_matches | Man page Source code |
| phenotypic_quality_term_info | Man page Source code |
| pk_GET | Man page |
| pk_anatomical_class | Man page Source code |
| pk_anatomical_detail | Man page Source code |
| pk_condition | Source code |
| pk_gene_detail | Man page Source code |
| pk_get_iri | Man page Source code |
| pk_get_ontotrace | Man page Source code |
| pk_get_ontotrace_meta | Man page Source code |
| pk_get_ontotrace_xml | Man page Source code |
| pk_get_study | Man page Source code |
| pk_get_study_list | Man page Source code |
| pk_get_study_meta | Man page Source code |
| pk_get_study_xml | Man page Source code |
| pk_is_ancestor | Man page Source code |
| pk_is_descendant | Man page Source code |
| pk_is_extinct | Man page Source code |
| pk_phenotype_class | Man page Source code |
| pk_phenotype_detail | Man page Source code |
| pk_taxon_class | Man page Source code |
| pk_taxon_detail | Man page Source code |
| pkb_api | Source code |
| pkb_args_to_query | Man page Source code |
| print.KBinfo | Man page Source code |
| print.phenotype | Man page Source code |
| print.terminfo | Man page Source code |
| profile_similarity | Man page Source code |
| quality_roots | Source code |
| rclean_jsonld_names | Man page Source code |
| rclean_jsonld_names.data.frame | Source code |
| rclean_jsonld_names.default | Source code |
| rclean_jsonld_names.list | Source code |
| reduce.ignoringDiag | Man page Source code |
| resnik_similarity | Man page Source code |
| resolve_label_expression | Man page Source code |
| rphenoscape-deprecated | Man page |
| similarity | Man page |
| state_symbols2labels | Man page Source code |
| stop_for_pk_status | Source code |
| subsumer_matrix | Man page Source code |
| tanimoto_similarity | Man page Source code |
| taxon_info | Man page Source code |
| taxon_ontology_iris | Man page |
| term_category | Man page Source code |
| term_category_detective | Source code |
| term_classification | Man page Source code |
| term_classification_raw | Source code |
| term_freqs | Man page Source code |
| term_info | Source code |
| term_iri | Man page |
| terminfo | Man page Source code |
| terms | Man page |
| test_read_nex | Source code |
