Files in xuz1/ENmix
Quality control and analysis tools for Illumina DNA methylation BeadChip
DESCRIPTION
NAMESPACE
R/DMR_finding.R
R/DunedinPACE.R
R/QCinfo.R
R/calcdetP.R
R/ctrlsva.R
R/dupicc.R
R/estimateCellProp.R
R/getCGinfo.R
R/getmeth.R
R/mage_norm_function.R
R/methDataSet-class.R
R/methscore.R
R/methyAge.R
R/mhtplot.R
R/mpreprocess.R
R/multifreqpoly.R
R/nmode.R
R/norm.quantile.R
R/oxBS.MLE.R
R/p.qqplot.R
R/pcrplot.R
R/plotCtrl.R
R/predSex.R
R/preprocessENmix.R
R/qcfilter.R
R/rcp.R
R/readidat.R
R/readmanifest.R
R/relic.R
R/repicc.R
R/rgDataSet-class.R
R/utils.R
README.md
inst/CITATION
inst/NEWS.Rd
inst/mPOA_Models.RData
inst/mage_ref.RData
inst/oxBS.MLE.RData
inst/pcclock_model1.RData
inst/pcclock_model2.RData
inst/pcclock_model3.RData
inst/pcclock_model4.RData
inst/testData/testData.R
inst/testData/testData.out
inst/unitTests/testDigests.rda
inst/unitTests/test_enmix.R
man/B2M.Rd
man/M2B.Rd
man/QCinfo.Rd
man/calcdetP.Rd
man/combp.Rd
man/ctrlsva.Rd
man/dupicc.Rd
man/estimateCellProp.Rd
man/freqpoly.Rd
man/getB.Rd
man/getCGinfo.Rd
man/getmeth.Rd
man/ipdmr.Rd
man/methDataSet-class.Rd
man/methscore.Rd
man/methyAge.Rd
man/mhtplot.Rd
man/mpreprocess.Rd
man/multifreqpoly.Rd
man/nmode.Rd
man/norm.quantile.Rd
man/oxBS.MLE.Rd
man/p.qqplot.Rd
man/pcrplot.Rd
man/plotCtrl.Rd
man/predSex.Rd
man/preprocessENmix.Rd
man/qcfilter.Rd
man/rcp.Rd
man/rcp2.Rd
man/readidat.Rd
man/readmanifest.Rd
man/relic.Rd
man/repicc.Rd
man/resultsChamp/failedSample.txt
man/resultsChamp/raw_SampleCluster.jpg
man/resultsChamp/raw_densityPlot.pdf
man/resultsChamp/raw_mdsPlot.pdf
man/rgDataSet-class.Rd
man/rm.cgsuffix.Rd
man/simubed.Rd
tests/runTests.R
vignettes/ENmix.Rmd
vignettes/ENmix.bib
vignettes/fig/BISULFITE_CONVERSION_I.jpg
vignettes/fig/ENmix_class.png
vignettes/fig/NEGATIVE.jpg
vignettes/fig/NON-POLYMORPHIC.jpg
vignettes/fig/NORM_ACGT.jpg
vignettes/fig/dist.jpg
vignettes/fig/freqpolygon_beta_beforeQC.jpg
vignettes/fig/pcr_diag.jpg
vignettes/fig/qc_CpG.jpg
vignettes/fig/qc_sample.jpg
